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2016 journal original-research Sci Data

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA

Identifiers and access

DOI
10.1038/sdata.2016.44
PubMed
27326542
PMC
PMC4978148
Cited by
1871

Key findings

The Brain Imaging Data Structure (BIDS) is introduced as a community standard for organising MRI data and metadata using existing file formats, unifying widespread practices and capturing the metadata needed for common processing operations to enable sharing and reuse across labs.

Abstract

Source: pubmed

The development of magnetic resonance imaging (MRI) techniques has defined modern neuroimaging. Since its inception, tens of thousands of studies using techniques such as functional MRI and diffusion weighted imaging have allowed for the non-invasive study of the brain. Despite the fact that MRI is routinely used to obtain data for neuroscience research, there has been no widely adopted standard for organizing and describing the data collected in an imaging experiment. This renders sharing and reusing data (within or between labs) difficult if not impossible and unnecessarily complicates the application of automatic pipelines and quality assurance protocols. To solve this problem, we have developed the Brain Imaging Data Structure (BIDS), a standard for organizing and describing MRI datasets. The BIDS standard uses file formats compatible with existing software, unifies the majority of practices already common in the field, and captures the metadata necessary for most common data processing operations.

Topics

  • open-data-standards
  • reproducibility-tooling

Preprint precursor

Earlier versions of this work that have been superseded by the published record above.

Lab authors

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