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2021 journal software J Open Source Softw

DataLad: distributed system for joint management of code, data, and their relationship

Halchenko YO, Meyer K, Poldrack B, Solanky DS, Wagner AS, Gors J, MacFarlane D, Pustina D, Sochat V, Ghosh SS, Mönch C, Markiewicz CJ, Waite L, Shlyakhter I, de la Vega A, Hayashi S, Häusler CO, Poline JB, Kadelka T, Skytén K, Jarecka D, Kennedy D, Strauss T, Cieslak M, Vavra P, Ioanas HI, Schneider R, Pflüger M, Haxby JV, Eickhoff SB, Hanke M

Identifiers and access

DOI
10.21105/joss.03262
PubMed
39469147
PMC
PMC11514317
PDF
Open-access copy →
Cited by
155

Key findings

DataLad is an open-source Python tool that builds on git-annex and Git to jointly version-manage code, data, and their relationships at any scale, providing decentralised, FAIR research-data management with full provenance and platform-independent command-line and Python interfaces.

Abstract

Source: pubmed

DataLad is a Python-based tool for the joint management of code, data, and their relationship, built on top of a versatile system for data logistics (git-annex) and the most popular distributed version control system (Git). It adapts principles of open-source software development and distribution to address the technical challenges of data management, data sharing, and digital provenance collection across the life cycle of digital objects. DataLad aims to make data management as easy as managing code. It streamlines procedures to consume, publish, and update data, for data of any size or type, and to link them as precisely versioned, lightweight dependencies. DataLad helps to make science more reproducible and FAIR (Wilkinson et al., 2016). It can capture complete and actionable process provenance of data transformations to enable automatic re-computation. The DataLad project (datalad.org) delivers a completely open, pioneering platform for flexible decentralized research data management (RDM) (Hanke, Pestilli, et al., 2021). It features a Python and a command-line interface, an extensible architecture, and does not depend on any centralized services but facilitates interoperability with a plurality of existing tools and services. In order to maximize its utility and target audience, DataLad is available for all major operating systems, and can be integrated into established workflows and environments with minimal friction.

Topics

  • reproducibility-tooling
  • open-data-standards

Lab authors

This record was curated from the lab's CV, NCBI MyBibliography, and OpenAlex. See PROJECTS.md for how to add or correct an entry via a pull request.