News
News archive
Announcements, papers, talks, and welcomes from the group, newest first.
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Welcome Yassine Jamaa
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Welcome Bruke Wossenseged
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A paper published on detecting vocal fold paralysis from acousting recordings and understanding sources of bias in recordings. Paper link
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Congrats to Sabeen for successfully submitting her thesis.
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Welcome Jordan Wilke.
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Congrats to Daniel for successfully defending his thesis.
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Congrats to Agathe for successfully presenting her thesis.
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Welcome Isaac Bevers.
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Welcome Tek Raj Chhetri.
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Welcome Miles Silva.
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Welcome Chaitanya Kapoor.
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Welcome Alina Weinberger.
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Welcome Kabilar Gunalan.
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Welcome Aaron Kanzer.
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Welcome Agathe Tournant.
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Welcome Jong Hwan.
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Welcome Puja Trivedi.
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Congrats to Claudia for submitting and presenting her thesis.
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Welcome Harsha Gazula, Anurag Gadde.
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Congrats to Gasser on successfully defending his thesis.
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Congrats to Alisha for being selected as one of the poster awards at the first Voice-AI symposium, and for accepting UPenn for grad school.
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Welcome Matthias Steiner, UROPs Sabeen Lohwala and Abdul-Kareem Aliu, and project manager Julie Bates.
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A paper published on meningioma detection in contrast enhanced T1 images using deep learning and the Nobrainer framework. Paper link
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New projects: 1) Creating a knowledgebase of the brain together with the Allen Institute for Brain Science as part of the Brain InitiativeCell Atlas Network . 2) Collecting voice data across disorders in ethical, privacy preserving manner to improve the ability for machine learning algorithms to learn from and derive insights and applications around communication, pediatric, respiratory, neurological, and mental health and wellbeing. This is part of the Bridge 2 AI program.
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Welcome Maedbh King
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Welcome Claudia Liauw
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BIDS support microscopy led by Marie-Helene Bourget published: Paper link
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Welcome Alisha Kodibagkar!
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Welcome Ying Xing Feng, Gasser Elbanna!
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Daniel Low presented analysis related to suicidal ideation in posts in /r/suicide subreddit and causal factors that alter ideation at a workshop at the Empirical Methods in Natural Language Processing Conference: Paper link
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Flagship paper of the Brain Initiative Cell Census Network (BICCN) show casing the breadth and depth of science and informatics (includes DANDI), published alongside a collection of associated research articles: Collection link
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Welcome Dhritiman Das!
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Welcome Aakanksha Rana!
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Reddit text analysis related to mental health support groups published at Journal of Medical Internet Research: Paper link
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Congratulations Alice on her Master's thesis.
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Received BRAIN Initiative award for Nobrainer deep learning software together with Sergey Plis at Georgia State University and Bruce Fischl at MGH Award details
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Pydra paper published at Scipy conference Paper link
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Welcome Rebecca Kleinberger
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Welcome Alice Bizuel
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Review of speech features related to mental health published at Laryngoscope Investigative Otolaryngology: Paper link
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Welcome Aishah Ismail
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Welcome Bhavya Kandimalla!
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Dorota Jarecka and Sanu Ann Abraham presenting Pydra and Reprolib at Neuroinformatics Congress in Warsaw.
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Kevin and Faruk's auditory brainstem paper published. Paper link
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Saying goodbye to Debanjan Ghosh and Wazeer Zulfikar! Thank you for all the work and look forward to future collaborations. Wish you the very best at your new positions.
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Part of BRAIN Initiative award (PI: David Keator) on curating terms for neuroimaging. Award details
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Congratulations Dr. Sitek on a successful defense.
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Received BRAIN Initiative award for a cellular neurophysiology archive together with Yaroslav Halchenko at Dartmouth, and Kitware. Award details
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Welcome Hoda Rajaei!
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Jakub Kaczmarjyk will be moving on to an MD-PhD program! Wish you the very best.
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We presented 10 posters and several tutorials during the OHBM Hackathon and Meeting. We were also part of the ReproNim training of the trainers.
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Updated preprint from Kevin and Faruk out on biorxiv.
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Welcome Debbie Burdinski!
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Talk at Computational Psychiatry Symposium in Iowa. Slides
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First Look presentation at Partners World Medical Innovation Forum. Video
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At MONI 2.0 presenting reproducibility and standards with Dorota Jarecka and assessment schemas and platforms with Anisha Keshavan.
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Creating a format for image transforms for BIDS derivatives.
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At Neuro Hackashop at Johns Hopkins to discuss platforms, reproducibility, and more.
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ReproNim perspective article on reproducibility in neuroimaging is that Everything matters. Published in Frontiers in Neuroinformatics. doi:10.3389/fninf.2019.00001
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Visualizing cerebellar gradients with the LittleBrain toolbox published in PLOS One. doi:10.1371/journal.pone.0210028
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Welcome Wazeer Zulfikar!
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Our group was at Coastal coding in Miami! Covering Repronim, Nipype and NiMARE.
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Welcome Kate Bentley!
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Robust preprocessing for task and resting fMRI using fMRIPrep published in Nature Methods. doi:10.1038/s41592-018-0235-4
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Patent granted for collaboration with MITLL on voice processing for estimating disorders. Patent description
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Our team "paranoid android" won the PAC 2018 challenge on depression diagnosis. Details here