2026 Imaging Neurosci (Camb)
Context modulates brain state dynamics and behavioral responses during narrative comprehension
Chen Y, Zada Z, Nastase SA, Ashby FG, Ghosh SS
Publications · 148 papers and preprints
A working list of papers and preprints from the Senseable Intelligence Group at the MIT McGovern Institute, compiled from group CVs, NCBI MyBibliography, and OpenAlex. Entries are organised by year, publication type, and topic and link out to the canonical record (DOI, PubMed, arXiv) and, where available, open-access PDFs. The list is filterable by year, type, topic, and lab author.
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148 of 148 papers shown
2026 · 5 papers
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- 2026 Preprint bioRxiv (Cold Spring Harbor Laboratory)
A human subcortical connectome at 400 μm resolution
Chiara Maffei, Ting Gong, Clemens Neudorfer, Dongsuk Sung, Dey Mihir, Kabilar Gunalan, Satrajit Ghosh, Jean C. Augustinack, Susie Y. Huang, Mark Richardson, Suzanne N. Haber, Anastasia Yendiki
- 2026 Preprint bioRxiv (Cold Spring Harbor Laboratory)
A layered standards framework for integrating single-cell and spatial omics data into brain cell atlases
Patrick L. Ray, Jeremy A. Miller, Dorota Jarecka, Kimberly A. Smith, Pamela Baker, Lydia Ng, Maryann E. Martone, Puja Trivedi, Rashmie Abeysinghe, Lisa Anderson, Anita Bandrowski, Vieth Edyta, Ashwin A. Bhandiwad, Tek Raj Chhetri, Licong Cui, Michelle Giglio, Jeff Goldy, Na Hong, Hao Huang, Yan Huang, Yasmeen Hussain, Nelson Johansen, Mariah Kenney, Lauren Kruse, Xiaojin Li, James Meldrim, Tyler Mollenkopf, Suvarna Nadendla, David Osumi-Sutherland, Raymond Sanchez, Richard H. Scheuermann, Shiqiang Tao, Charles Vanderburg, Yuntao Yang, Alex Ropelewski, Shoaib Mufti, Ed Lein, Hua Xu, W Jim Zheng, Satrajit S. Ghosh, Owen White, Michael Hawrylycz, Guo-Qiang Zhang, Carol L. Thompson
- 2026 Preprint
Large Language Model–Generated Tutoring Responses Receive Higher Ratings but Are Penalized by Source-Based Evaluation Bias
Ola Ozernov-Palchik, Fabio Catania, John D. E. Gabrieli, Satrajit S Ghosh
- 2026 Preprint bioRxiv (Cold Spring Harbor Laboratory)
Pregistered movie-fMRI analyses reveal altered visual feature encoding in autism in pSTS
Jeff Mentch, Yibei Chen, Tamara Vanderwal, Satrajit S Ghosh
2025 · 18 papers
- 2025 Imaging Neurosci (Camb)
Brain functional connectivity predicts depression and anxiety during childhood and adolescence: A connectome-based predictive modeling approach
Morfini F, Kucyi A, Zhang J, Bauer CCC, Bloom PA, Pagliaccio D, Hubbard NA, Rosso IM, Yendiki A, Ghosh SS, Pizzagalli DA, Gabrieli JDE, Whitfield-Gabrieli S, Auerbach RP
- 2025 PLoS One
Predicting treatment response to cognitive behavior therapy in social anxiety disorder on the basis of demographics, psychiatric history, and scales: A machine learning approach
Bukhari Q, Rosenfield D, Hofmann SG, Gabrieli JDE, Ghosh SS
- 2025 Ann Dyslexia
(Not so) universal literacy screening: a survey of educators reveals variability in implementation
Ozernov-Palchik O, Elizee Z, Catania F, Hacikamiloglu M, Shattuck-Hufnagel S, Petscher Y, Ghosh S, Gabrieli JDE
- 2025 J Med Internet Res
Standardizing Survey Data Collection to Enhance Reproducibility: Development and Comparative Evaluation of the ReproSchema Ecosystem
Chen Y, Jarecka D, Abraham SA, Gau R, Ng E, Low DM, Bevers I, Johnson A, Keshavan A, Klein A, Clucas J, Rosli Z, Hodge SM, Linkersdörfer J, Bartsch H, Das S, Fair D, Kennedy D, Ghosh SS
- 2025 Proc Int World Wide Web Conf
Bridging the Scientific Knowledge Gap and Reproducibility: A Survey of Provenance, Assertion and Evidence Ontologies
Chhetri TR, Halchenko YO, Jarecka D, Trivedi P, Ghosh SS, Ray P, Ng L
- 2025 Hippocampus
Evidence of Disrupted Hippocampal Gray- and White-Matter Development in Adolescent Anxiety Disorders, Independent From Early-Life Stress
Pedroza-Sotelo K, Schwarb H, Auerbach RP, Ghosh SS, Henin A, Hofmann SG, Pizzagalli DA, Yendiki A, Whitfield-Gabrieli S, Gabrieli JDE, Hubbard NA
- 2025 eNeuro
Open Data In Neurophysiology: Advancements, Solutions & Challenges
Gillon CJ, Baker C, Ly R, Balzani E, Brunton BW, Schottdorf M, Ghosh S, Dehghani N
- 2025 Clin Psychol Sci
Prospective Relations between Cortical Thickness and Change in Internalizing Symptoms are Moderated by Chronic Stress Exposure in Adolescents with Depression and Anxiety
Romer AL, Hubbard NA, Auerbach RP, Yendiki A, Ghosh S, Henin A, Hofmann SG, Gabrieli JDE, Whitfield-Gabrieli S, Pizzagalli DA
- 2025 PNAS Nexus
Social determinants of health and brain connectivity predict physical activity behavior change after new cardiovascular diagnosis
Thovinakere N, Ghosh SS, Iturria-Medina Y, Geddes MR
- 2025 Conference Front Digit Health
Interactive Panel Summaries of the 2024 Voice AI Symposium
Bélisle-Pipon JC, Anibal J, Bahr R, Bedrick S, Coleman O, Dorr D, Evans BJ, Fagherazzi G, Gelbard A, Ghosh S, Ho A, Jackson C, Joachim D, Kourtis L, Krussel A, Lahav A, Leuze B, MacDonald B, Miller G, Mohan V, Naunheim M, Powell M, Rameau A, Ramphal S, Ravitsky V, Reavis C, Salvi Cruz S, Toghranegar J, Vogel A, Watts S, Yracheta J, Zhao R, Bridge2AI-Voice Consortium, Bensoussan Y
- 2025 Preprint medRxiv
Consensus-Based Definitions for Vocal Biomarkers: The International VOCAL Initiative
Mégane Pizzimenti, Ayush Kalia, Jamie Toghranegar, Mohamed Ebraheem, Nicholas Cummins, Satrajit Ghosh, James Anibal, Rhoda Au, Arian Azarang, Ruth Huntley Bahr, Steven Bedrick, Hugo Botha, Oita C Coleman, Abir Elbéji, Lampros Kourtis, Anaïs Rameau, Jaskanwal Deep Singh Sara, Stephanie Watts, Daria Hemmerling, Jiří Mekyska, Marisha Speights Atkins, the eVoiceNet COST Action (CA24128), Jean‐Christophe Bélisle‐Pipon, Yaël Bensoussan, Guy Fagherazzi
- 2025 Preprint bioRxiv (Cold Spring Harbor Laboratory)
A naturalistic reinforcement learning task uncovers historical neural representations
Sangsoo Jin, Juhyeon Lee, Juhyeon Lee, Satrajit Ghosh, Jong‐Hwan Lee, Jong‐Hwan Lee
- 2025 ArXiv
An Intelligent Infrastructure as a Foundation for Modern Science
Ghosh S
- 2025 Preprint ArXiv.org
Standards in the Preparation of Biomedical Research Metadata: A Bridge2AI Perspective
J. Harry Caufield, Satrajit Ghosh, Shimanqi Kong, Jillian A. Parker, Nathan C. Sheffield, Bhavesh Patel, Andrew E. Williams, Tim W. Clark, Mónica Muñoz-Torres
- 2025 Preprint ArXiv.org
STRUCTSENSE: A Task-Agnostic Agentic Framework for Structured Information Extraction with Human-In-The-Loop Evaluation and Benchmarking
Tek Raj Chhetri, Yibei Chen, Trivedi, Puja, Dorota Jarecka, Saif Haobsh, Patrick L. Ray, Lydia Ng, Satrajit Ghosh
- 2025 Preprint PsyArXiv
Text Psychometrics: Assessing Psychological Constructs in Text Using Natural Language Processing
Low DM, Mair P, Nock MK, Ghosh SS
- 2025 Preprint PsyArXiv
Using large language models to create lexicons for interpretable text models with high content validity: the Suicide Risk Lexicon
Low DM, Rankin O, Coppersmith DDL, Bentley K, Nock MK, Ghosh SS
- 2025 Frontiers in Digital Health
The Bridge2AI-voice application: initial feasibility study of voice data acquisition through mobile health
Moothedan E, Boyer M, Watts S, Abdel-Aty Y, Ghosh S, Rameau A, Sigaras A, Elemento O, Bridge2AI-Voice Consortium, Bensoussan Y
2024 · 15 papers
- 2024 Science
Integrated platform for multiscale molecular imaging and phenotyping of the human brain
Park J, Wang J, Guan W, Gjesteby LA, Pollack D, Kamentsky L, Evans NB, Stirman J, Gu X, Zhao C, Marx S, Kim ME, Choi SW, Snyder M, Chavez D, Su-Arcaro C, Tian Y, Park CS, Zhang Q, Yun DH, Moukheiber M, Feng G, Yang XW, Keene CD, Hof PR, Ghosh SS, Frosch MP, Brattain LJ, Chung K
- 2024 Sci Data
The Human Connectome Project of adolescent anxiety and depression dataset
Hubbard NA, Bauer CCC, Siless V, Auerbach RP, Elam JS, Frosch IR, Henin A, Hofmann SG, Hodge MR, Jones R, Lenzini P, Lo N, Park AT, Pizzagalli DA, Vaz-DeSouza F, Gabrieli JDE, Whitfield-Gabrieli S, Yendiki A, Ghosh SS
- 2024 Imaging Neurosci (Camb)
A reproducible and generalizable software workflow for analysis of large-scale neuroimaging data collections using BIDS Apps
Zhao C, Jarecka D, Covitz S, Chen Y, Eickhoff SB, Fair DA, Franco AR, Halchenko YO, Hendrickson TJ, Hoffstaedter F, Houghton A, Kiar G, Macdonald A, Mehta K, Milham MP, Salo T, Hanke M, Ghosh SS, Cieslak M, Satterthwaite TD
- 2024 Psychol Med
Detecting suicide risk among U.S. servicemembers and veterans: a deep learning approach using social media data
Zuromski KL, Low DM, Jones NC, Kuzma R, Kessler D, Zhou L, Kastman EK, Epstein J, Madden C, Ghosh SS, Gowel D, Nock MK
- 2024 PLOS Digit Health
Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings
Low DM, Rao V, Randolph G, Song PC, Ghosh SS
- 2024 Am J Psychiatry
Resting-State Functional Connectivity of the Amygdala in Autism: A Preregistered Large-Scale Study
Kliemann D, Galdi P, Van De Water AL, Egger B, Jarecka D, Adolphs R, Ghosh SS
- 2024 Apert Neuro
Brainchop: Providing an Edge Ecosystem for Deployment of Neuroimaging Artificial Intelligence Models
Plis SM, Masoud M, Hu F, Hanayik T, Ghosh SS, Drake C, Newman-Norlund R, Rorden C
- 2024 ArXiv
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)
Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, Calhoun VD, Castelli FM, Clement P, Cohen AL, Cohen-Adad J, D'Ambrosio S, de Hollander G, de la Iglesia-Vayá M, de la Vega A, Delorme A, Devinsky O, Draschkow D, Duff EP, DuPre E, Earl E, Esteban O, Feingold FW, Flandin G, Galassi A, Gallitto G, Ganz M, Gau R, Gholam J, Ghosh SS, Giacomel A, Gillman AG, Gleeson P, Gramfort A, Guay S, Guidali G, Halchenko YO, Handwerker DA, Hardcastle N, Herholz P, Hermes D, Honey CJ, Innis RB, Ioanas HI, Jahn A, Karakuzu A, Keator DB, Kiar G, Kincses B, Laird AR, Lau JC, Lazari A, Legarreta JH, Li A, Li X, Love BC, Lu H, Marcantoni E, Maumet C, Mazzamuto G, Meisler SL, Mikkelsen M, Mutsaerts H, Nichols TE, Nikolaidis A, Nilsonne G, Niso G, Norgaard M, Okell TW, Oostenveld R, Ort E, Park PJ, Pawlik M, Pernet CR, Pestilli F, Petr J, Phillips C, Poline JB, Pollonini L, Raamana PR, Ritter P, Rizzo G, Robbins KA, Rockhill AP, Rogers C, Rokem A, Rorden C, Routier A, Saborit-Torres JM, Salo T, Schirner M, Smith RE, Spisak T, Sprenger J, Swann NC, Szinte M, Takerkart S, Thirion B, Thomas AG, Torabian S, Varoquaux G, Voytek B, Welzel J, Wilson M, Yarkoni T, Gorgolewski KJ
- 2024 Nat Methods
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Dörig M, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Halchenko YO, Hannan AJ, Heinsfeld AS, Huber L, Hughes ME, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Meier ML, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira MM, Shaw TB, Sowman PF, Spitz G, Stewart AW, Ye X, Zhu JD, Narayanan A, Bollmann S
- 2024 J Open Source Softw
HeuDiConv - flexible DICOM conversion into structured directory layouts
Halchenko YO, Goncalves M, Ghosh S, Velasco P, Visconti di Oleggio Castello M, Salo T, Wodder JT 2nd, Hanke M, Sadil P, Gorgolewski KJ, Ioanas HI, Rorden C, Hendrickson TJ, Dayan M, Houlihan SD, Kent J, Strauss T, Lee J, To I, Markiewicz CJ, Lukas D, Butler ER, Thompson T, Termenon M, Smith DV, Macdonald A, Kennedy DN
- 2024 Conference Interspeech 2024
Developing Multi-Disorder Voice Protocols: A team science approach involving clinical expertise, bioethics, standards, and DEI
Bensoussan Y, Ghosh SS, Rameau A, Boyer M, Bahr R, Watts S, Rudzick F, Bolser D, Lerner-Ellis J, Awan S, Powell M, Belisle-Pipon J-C, Ravitsky V, Johnson A, Sigaras A, Elemento O, Dorr D, Payne P
- 2024 JAMA Netw Open
Year-Long Cannabis Use for Medical Symptoms and Brain Activation During Cognitive Processes
Burdinski DCL, Kodibagkar A, Potter K, Schuster RM, Evins AE, Ghosh SS, Gilman JM
- 2024 Preprint bioRxiv (Cold Spring Harbor Laboratory)
AI-readiness Criteria for Biomedical Data
Tim W. Clark, J. Harry Caufield, Jillian A. Parker, Mohammad Sadnan Al Manir, Edilberto Amorim, James A. Eddy, Nayoon Gim, Brian Gow, Wesley Goar, Jan N. Hansen, Nomi Harris, Henning Hermjakob, Marcin Joachimiak, Gianna Jordan, In-Hee Lee, Shannon K. McWeeney, Camille Nebeker, Milen Nikolov, Sarah J. Ratcliffe, Jamie Shaffer, Nathan C. Sheffield, Gloria Sheynkman, James Stevenson, Jake Y. Chen, Chris Mungall, Alex H. Wagner, Sek Won Kong, Satrajit Ghosh, Bhavesh Patel, Andrew E. Williams, Mónica Muñoz-Torres, Mónica Muñoz-Torres
- 2024 Conference Aperture Neuro
Proceedings of the OHBM Brainhack 2022
Stefano Moia, Hao-Ting Wang, Anibal Sólon Heinsfeld, Dorota Jarecka, Yufang Yang, Stephan Heunis, Michele Svanera, Benjamin De Leener, Andrea Gondová, Sin Kim, Arshitha Basavaraj, Johanna Bayer, Roza G. Bayrak, Pierre‐Louis Bazin, Isil Poyraz Bilgin, Steffen Bollmann, Daniel Borek, Valentina Borghesani, Trang Ngoc Cao, Gang Chen, Alejandro de la Vega, Sebastian Dresbach, Philipp Ehses, Jan Ernsting, Inês Esteves, Oscar Ferrante, Kelly Garner, Rémi Gau, Élodie Germani, Tara Ghafari, Satrajit Ghosh, Sarah E. Goodale, Cassandra Gould van Praag, Samuel Guay, Ömer Faruk Gülban, Yaroslav O. Halchenko, Michael Hanke, Peer Herholz, Katja Heuer, Felix Hoffstaedter, Ruoqi Huang, Laurentius Huber, Ole Jensen, Kan Keeratimahat, Julian Q. Kosciessa, Sladjana Lukic, Neville Magielse, Christopher J. Markiewicz, Caroline G. Martin, Camille Maumet, Anna Menacher, Jeff Mentch, Christian Mönch, Shammi More, Leonardo Muller-Rodriguez, Samuel A. Nastase, Eliana Nicolaisen‐Sobesky, Dylan M. Nielson, Christopher Nolan, François Paugam, Pedro Pinheiro‐Chagas, Ana Lúısa Pinho, Alessandra Pizzuti, Benjamin Poldrack, Benedikt A. Poser, Roberta Rocca, Jacob Sanz-Robinson, Kelvin Sarink, Kevin R. Sitek, Nadine Spychala, Rüdiger Stirnberg, Michał Szczepanik, Mohammad Torabi, Roberto Toro, Sebastian Urchs, Sofie L. Valk, Adina Wagner, Laura K. Waite, Alexander Q. Waite, Lea Waller, Tyler J. Wishard, Jianxiao Wu, Yuchen Zhou, Janine Bijsterbosch, The Physiopy Community
- 2024 Preprint arXiv
Explaining Deep Learning Embeddings for Speech Emotion Recognition by Predicting Interpretable Acoustic Features
Dixit S, Low DM, Elbanna G, Catania F, Ghosh SS
2023 · 9 papers
- 2023 Histochem Cell Biol
OME-Zarr: a cloud-optimized bioimaging file format with international community support
Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Casas Moreno X, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Küpcü Yoldaş A, Kyoda K, le Tournoulx de la Villegeorges A, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, Swedlow JR
- 2023 PLoS Biol
A guide to the BRAIN Initiative Cell Census Network data ecosystem
Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, Mukamel E, Ng L, Osumi-Sutherland D, Peng H, Ray PL, Sanchez R, Regev A, Ropelewski A, Scheuermann RH, Tan SZK, Thompson CL, Tickle T, Tilgner H, Varghese M, Wester B, White O, Zeng H, Aevermann B, Allemang D, Ament S, Athey TL, Baker C, Baker KS, Baker PM, Bandrowski A, Banerjee S, Bishwakarma P, Carr A, Chen M, Choudhury R, Cool J, Creasy H, D'Orazi F, Degatano K, Dichter B, Ding SL, Dolbeare T, Ecker JR, Fang R, Fillion-Robin JC, Fliss TP, Gee J, Gillespie T, Gouwens N, Zhang GQ, Halchenko YO, Harris NL, Herb BR, Hintiryan H, Hood G, Horvath S, Huo B, Jarecka D, Jiang S, Khajouei F, Kiernan EA, Kir H, Kruse L, Lee C, Lelieveldt B, Li Y, Liu H, Liu L, Markuhar A, Mathews J, Mathews KL, Mezias C, Miller MI, Mollenkopf T, Mufti S, Mungall CJ, Orvis J, Puchades MA, Qu L, Receveur JP, Ren B, Sjoquist N, Staats B, Tward D, van Velthoven CTJ, Wang Q, Xie F, Xu H, Yao Z, Yun Z, Zhang YR, Zheng WJ, Zingg B
- 2023 Radiology
Brain Growth Charts for Quantitative Analysis of Pediatric Clinical Brain MRI Scans with Limited Imaging Pathology
Schabdach JM, Schmitt JE, Sotardi S, Vossough A, Andronikou S, Roberts TP, Huang H, Padmanabhan V, Ortiz-Rosa A, Gardner M, Covitz S, Bedford SA, Mandal AS, Chaiyachati BH, White SR, Bullmore E, Bethlehem RAI, Shinohara RT, Billot B, Iglesias JE, Ghosh S, Gur RE, Satterthwaite TD, Roalf D, Seidlitz J, Alexander-Bloch A, Lifespan Brain Chart Consortium
- 2023 Sci Data
A comparison of neuroelectrophysiology databases
Subash P, Gray A, Boswell M, Cohen SL, Garner R, Salehi S, Fisher C, Hobel S, Ghosh S, Halchenko Y, Dichter B, Poldrack RA, Markiewicz C, Hermes D, Delorme A, Makeig S, Behan B, Sparks A, Arnott SR, Wang Z, Magnotti J, Beauchamp MS, Pouratian N, Toga AW, Duncan D
- 2023 BMC Psychiatry
Mindfulness-based real-time fMRI neurofeedback: a randomized controlled trial to optimize dosing for depressed adolescents
Bloom PA, Pagliaccio D, Zhang J, Bauer CCC, Kyler M, Greene KD, Treves I, Morfini F, Durham K, Cherner R, Bajwa Z, Wool E, Olafsson V, Lee RF, Bidmead F, Cardona J, Kirshenbaum JS, Ghosh S, Hinds O, Wighton P, Galfalvy H, Simpson HB, Whitfield-Gabrieli S, Auerbach RP
- 2023 Nat Hum Behav
Align with the NMIND consortium for better neuroimaging
Kiar G, Clucas J, Feczko E, Goncalves M, Jarecka D, Markiewicz CJ, Halchenko YO, Hermosillo R, Li X, Miranda-Dominguez O, Ghosh S, Poldrack RA, Satterthwaite TD, Milham MP, Fair D
- 2023 Front Neuroinform
NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query
Queder N, Tien VB, Abraham SA, Urchs SGW, Helmer KG, Chaplin D, van Erp TGM, Kennedy DN, Poline JB, Grethe JS, Ghosh SS, Keator DB
- 2023 Sci Rep
Dissociating COVID-19 from other respiratory infections based on acoustic, motor coordination, and phonemic patterns
Talkar T, Low DM, Simpkin AJ, Ghosh S, O'Keeffe DT, Quatieri TF
- 2023 Conference INTERNATIONAL CONFERENCE ON MULTIMODAL INTERACTION
Multimodal Conversational Agents for People with Neurodevelopmental Disorders
Fabio Catania, Tanya Talkar, Franca Garzotto, Benjamin R. Cowan, Thomas F. Quatieri, Satrajit Ghosh
2022 · 12 papers
- 2022 Elife
The Neurodata Without Borders ecosystem for neurophysiological data science
Rübel O, Tritt A, Ly R, Dichter BK, Ghosh S, Niu L, Baker P, Soltesz I, Ng L, Svoboda K, Frank L, Bouchard KE
- 2022 Nat Methods
TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
Ciric R, Thompson WH, Lorenz R, Goncalves M, MacNicol EE, Markiewicz CJ, Halchenko YO, Ghosh SS, Gorgolewski KJ, Poldrack RA, Esteban O
- 2022 Neuroinformatics
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility
Abrams MB, Bjaalie JG, Das S, Egan GF, Ghosh SS, Goscinski WJ, Grethe JS, Kotaleski JH, Ho ETW, Kennedy DN, Lanyon LJ, Leergaard TB, Mayberg HS, Milanesi L, Mouček R, Poline JB, Roy PK, Strother SC, Tang TB, Tiesinga P, Wachtler T, Wójcik DK, Martone ME
- 2022 Neuroinformatics
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data
Poline JB, Kennedy DN, Sommer FT, Ascoli GA, Van Essen DC, Ferguson AR, Grethe JS, Hawrylycz MJ, Thompson PM, Poldrack RA, Ghosh SS, Keator DB, Athey TL, Vogelstein JT, Mayberg HS, Martone ME
- 2022 Sci Rep
Deep neural networks allow expert-level brain meningioma segmentation and present potential for improvement of clinical practice
Boaro A, Kaczmarzyk JR, Kavouridis VK, Harary M, Mammi M, Dawood H, Shea A, Cho EY, Juvekar P, Noh T, Rana A, Ghosh S, Arnaout O
- 2022 J Psychiatr Res
Can machine learning identify childhood characteristics that predict future development of bipolar disorder a decade later?
Uchida M, Bukhari Q, DiSalvo M, Green A, Serra G, Hutt Vater C, Ghosh SS, Faraone SV, Gabrieli JDE, Biederman J
- 2022 Elife
Neuroscout, a unified platform for generalizable and reproducible fMRI research
de la Vega A, Rocca R, Blair RW, Markiewicz CJ, Mentch J, Kent JD, Herholz P, Ghosh SS, Poldrack RA, Yarkoni T
- 2022 Neuroimage
Through the looking glass: Deep interpretable dynamic directed connectivity in resting fMRI
Mahmood U, Fu Z, Ghosh S, Calhoun V, Plis S
- 2022 Front Neurosci
Structural Connectivity of Human Inferior Colliculus Subdivisions Using in vivo and post mortem Diffusion MRI Tractography
Sitek KR, Calabrese E, Johnson GA, Ghosh SS, Chandrasekaran B
- 2022 Front Neurosci
Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data
Bourget MH, Kamentsky L, Ghosh SS, Mazzamuto G, Lazari A, Markiewicz CJ, Oostenveld R, Niso G, Halchenko YO, Lipp I, Takerkart S, Toussaint PJ, Khan AR, Nilsonne G, Castelli FM, BIDS Maintainers, Cohen-Adad J
- 2022 IEEE Open Journal of Engineering in Medicine and Biology
Artificial Intelligence for Detecting COVID-19 With the Aid of Human Cough, Breathing and Speech Signals: Scoping Review
Mouzzam Husain, Andrew J. Simpkin, Claire Gibbons, Tanya Talkar, Daniel M. Low, Paolo Bonato, Satrajit Ghosh, Thomas F. Quatieri, Derek T. O’Keeffe
- 2022 Clinical Psychological Science
Connectivity Patterns Evoked by Fearful Faces Demonstrate Reduced Flexibility Across a Shared Dimension of Adolescent Anxiety and Depression
Nicholas A. Hubbard, Randy P. Auerbach, Viviana Siless, Nicole Lo, Isabelle R. Frosch, Danielle E. Clark, Robert J. Jones, Rebecca Kremens, Megan Pinaire, Flavia Vaz-DeSouza, Satrajit Ghosh, Aude Henin, Stefan G. Hofmann, Diego A. Pizzagalli, Isabelle M. Rosso, Anastasia Yendiki, Susan Whitfield‐Gabrieli, John D. E. Gabrieli
2021 · 8 papers
- 2021 Nature
A multimodal cell census and atlas of the mammalian primary motor cortex
BRAIN Initiative Cell Census Network (BICCN)
- 2021 J Open Source Softw
DataLad: distributed system for joint management of code, data, and their relationship
Halchenko YO, Meyer K, Poldrack B, Solanky DS, Wagner AS, Gors J, MacFarlane D, Pustina D, Sochat V, Ghosh SS, Mönch C, Markiewicz CJ, Waite L, Shlyakhter I, de la Vega A, Hayashi S, Häusler CO, Poline JB, Kadelka T, Skytén K, Jarecka D, Kennedy D, Strauss T, Cieslak M, Vavra P, Ioanas HI, Schneider R, Pflüger M, Haxby JV, Eickhoff SB, Hanke M
- 2021 Conference Neuron
Brainhack: Developing a culture of open, inclusive, community-driven neuroscience
Gau R, Noble S, Heuer K, Bottenhorn KL, Bilgin IP, Yang YF, Huntenburg JM, Bayer JMM, Bethlehem RAI, Rhoads SA, Vogelbacher C, Borghesani V, Levitis E, Wang HT, Van Den Bossche S, Kobeleva X, Legarreta JH, Guay S, Atay SM, Varoquaux GP, Huijser DC, Sandström MS, Herholz P, Nastase SA, Badhwar A, Dumas G, Schwab S, Moia S, Dayan M, Bassil Y, Brooks PP, Mancini M, Shine JM, O'Connor D, Xie X, Poggiali D, Friedrich P, Heinsfeld AS, Riedl L, Toro R, Caballero-Gaudes C, Eklund A, Garner KG, Nolan CR, Demeter DV, Barrios FA, Merchant JS, McDevitt EA, Oostenveld R, Craddock RC, Rokem A, Doyle A, Ghosh SS, Nikolaidis A, Stanley OW, Uruñuela E, Brainhack Community
- 2021 J Med Internet Res
Remote Digital Psychiatry for Mobile Mental Health Assessment and Therapy: MindLogger Platform Development Study
Klein A, Clucas J, Krishnakumar A, Ghosh SS, Van Auken W, Thonet B, Sabram I, Acuna N, Keshavan A, Rossiter H, Xiao Y, Semenuta S, Badioli A, Konishcheva K, Abraham SA, Alexander LM, Merikangas KR, Swendsen J, Lindner AB, Milham MP
- 2021 Cerebellum
Functional Alterations in Cerebellar Functional Connectivity in Anxiety Disorders
Lee YJ, Guell X, Hubbard NA, Siless V, Frosch IR, Goncalves M, Lo N, Nair A, Ghosh SS, Hofmann SG, Auerbach RP, Pizzagalli DA, Yendiki A, Gabrieli JDE, Whitfield-Gabrieli S, Anteraper SA
- 2021 Proc Conf Empir Methods Nat Lang Process
It's quality and quantity: the effect of the amount of comments on online suicidal posts
Low DM, Zuromski KL, Kessler D, Ghosh SS, Nock M, Dempsey W
- 2021 Hum Brain Mapp
The Open Brain Consent: Informing research participants and obtaining consent to share brain imaging data
Bannier E, Barker G, Borghesani V, Broeckx N, Clement P, Emblem KE, Ghosh S, Glerean E, Gorgolewski KJ, Havu M, Halchenko YO, Herholz P, Hespel A, Heunis S, Hu Y, Hu CP, Huijser D, de la Iglesia Vayá M, Jancalek R, Katsaros VK, Kieseler ML, Maumet C, Moreau CA, Mutsaerts HJ, Oostenveld R, Ozturk-Isik E, Pascual Leone Espinosa N, Pellman J, Pernet CR, Pizzini FB, Trbalić AŠ, Toussaint PJ, Visconti di Oleggio Castello M, Wang F, Wang C, Zhu H
- 2021
Uncertainty-Aware Boosted Ensembling in Multi-Modal Settings
Utkarsh Sarawgi, Rishab Khincha, Wazeer Zulfikar, Satrajit Ghosh, Pattie Maes
2020 · 13 papers
- 2020 Laryngoscope Investig Otolaryngol
Automated assessment of psychiatric disorders using speech: A systematic review
Low DM, Bentley KH, Ghosh SS
- 2020 J Med Internet Res
Natural Language Processing Reveals Vulnerable Mental Health Support Groups and Heightened Health Anxiety on Reddit During COVID-19: Observational Study
Low DM, Rumker L, Talkar T, Torous J, Cecchi G, Ghosh SS
- 2020 Nat Protoc
Analysis of task-based functional MRI data preprocessed with fMRIPrep
Esteban O, Ciric R, Finc K, Blair RW, Markiewicz CJ, Moodie CA, Kent JD, Goncalves M, DuPre E, Gomez DEP, Ye Z, Salo T, Valabregue R, Amlien IK, Liem F, Jacoby N, Stojić H, Cieslak M, Urchs S, Halchenko YO, Ghosh SS, De La Vega A, Yarkoni T, Wright J, Thompson WH, Poldrack RA, Gorgolewski KJ
- 2020 Psychiatry Res
Real-time fMRI neurofeedback reduces auditory hallucinations and modulates resting state connectivity of involved brain regions: Part 2: Default mode network -preliminary evidence
Bauer CCC, Okano K, Ghosh SS, Lee YJ, Melero H, Angeles CL, Nestor PG, Del Re EC, Northoff G, Niznikiewicz MA, Whitfield-Gabrieli S
- 2020 Psychiatry Res
Real-time fMRI feedback impacts brain activation, results in auditory hallucinations reduction: Part 1: Superior temporal gyrus -Preliminary evidence
Okano K, Bauer CCC, Ghosh SS, Lee YJ, Melero H, de Los Angeles C, Nestor PG, Del Re EC, Northoff G, Whitfield-Gabrieli S, Niznikiewicz MA
- 2020 Neuroimage Clin
Brain function and clinical characterization in the Boston adolescent neuroimaging of depression and anxiety study
Hubbard NA, Siless V, Frosch IR, Goncalves M, Lo N, Wang J, Bauer CCC, Conroy K, Cosby E, Hay A, Jones R, Pinaire M, Vaz De Souza F, Vergara G, Ghosh S, Henin A, Hirshfeld-Becker DR, Hofmann SG, Rosso IM, Auerbach RP, Pizzagalli DA, Yendiki A, Gabrieli JDE, Whitfield-Gabrieli S
- 2020 Neuroimage Clin
Cingulum-Callosal white-matter microstructure associated with emotional dysregulation in children: A diffusion tensor imaging study
Hung Y, Uchida M, Gaillard SL, Woodworth H, Kelberman C, Capella J, Kadlec K, Goncalves M, Ghosh S, Yendiki A, Chai XJ, Hirshfeld-Becker DR, Whitfield-Gabrieli S, Gabrieli JDE, Biederman J
- 2020 Neuroimage Clin
Image acquisition and quality assurance in the Boston Adolescent Neuroimaging of Depression and Anxiety study
Siless V, Hubbard NA, Jones R, Wang J, Lo N, Bauer CCC, Goncalves M, Frosch I, Norton D, Vergara G, Conroy K, De Souza FV, Rosso IM, Wickham AH, Cosby EA, Pinaire M, Hirshfeld-Becker D, Pizzagalli DA, Henin A, Hofmann SG, Auerbach RP, Ghosh S, Gabrieli J, Whitfield-Gabrieli S, Yendiki A
- 2020 Annu Rev Neurosci
Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics
Charles AS, Falk B, Turner N, Pereira TD, Tward D, Pedigo BD, Chung J, Burns R, Ghosh SS, Kebschull JM, Silversmith W, Vogelstein JT
- 2020 Cerebellum
Neurodevelopmental and Psychiatric Symptoms in Patients with a Cyst Compressing the Cerebellum: an Ongoing Enigma
Guell X, Anteraper SA, Ghosh SS, Gabrieli JDE, Schmahmann JD
- 2020 Conference Python in Science Conference;
Pydra - a flexible and lightweight dataflow engine for scientific analyses
Jarecka D, Goncalves M, Markiewicz C, Esteban O, Lo N, Kaczmarzyk J, Ghosh S
- 2020 Preprint bioRxiv (Cold Spring Harbor Laboratory)
Asymmetric Functional Gradients in the Human Subcortex
Xavier Guell, Jeremy D. Schmahmann, John D. E. Gabrieli, Satrajit Ghosh, Maiya R. Geddes
- 2020
Software Tool to Read, Represent, Manipulate, and Apply N-Dimensional Spatial Transforms
Oscar Estéban, Mathias Goncalves, Christopher J. Markiewicz, Satrajit Ghosh, Russell A. Poldrack
2019 · 8 papers
- 2019 Nat Methods
fMRIPrep: a robust preprocessing pipeline for functional MRI
Esteban O, Markiewicz CJ, Blair RW, Moodie CA, Isik AI, Erramuzpe A, Kent JD, Goncalves M, DuPre E, Snyder M, Oya H, Ghosh SS, Wright J, Durnez J, Poldrack RA, Gorgolewski KJ
- 2019 Front Neuroinform
Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging
Kennedy DN, Abraham SA, Bates JF, Crowley A, Ghosh S, Gillespie T, Goncalves M, Grethe JS, Halchenko YO, Hanke M, Haselgrove C, Hodge SM, Jarecka D, Kaczmarzyk J, Keator DB, Meyer K, Martone ME, Padhy S, Poline JB, Preuss N, Sincomb T, Travers M
- 2019 Elife
Mapping the human subcortical auditory system using histology, postmortem MRI and in vivo MRI at 7T
Sitek KR, Gulban OF, Calabrese E, Johnson GA, Lage-Castellanos A, Moerel M, Ghosh SS, De Martino F
- 2019 PLoS One
LittleBrain: A gradient-based tool for the topographical interpretation of cerebellar neuroimaging findings
Guell X, Goncalves M, Kaczmarzyk JR, Gabrieli JDE, Schmahmann JD, Ghosh SS
- 2019 Dev Cogn Neurosci
Neurofeedback and neuroplasticity of visual self-processing in depressed and healthy adolescents: A preliminary study
Quevedo K, Liu G, Teoh JY, Ghosh S, Zeffiro T, Ahrweiler N, Zhang N, Wedan R, Oh S, Guercio G, Paret C
- 2019 J Speech Lang Hear Res
Persistent Neurobehavioral Markers of Developmental Morphosyntax Errors in Adults
Wagley N, Perrachione TK, Ostrovskaya I, Ghosh SS, Saxler PK, Lymberis J, Wexler K, Gabrieli JDE, Kovelman I
- 2019 Front Neuroinform
Knowing What You Know in Brain Segmentation Using Bayesian Deep Neural Networks
McClure P, Rho N, Lee JA, Kaczmarzyk JR, Zheng CY, Ghosh SS, Nielson DM, Thomas AG, Bandettini P, Pereira F
- 2019 Psychiatric Annals
Will Neuroimaging Produce a Clinical Tool for Psychiatry?
Satrajit Ghosh, Justin T. Baker
2018 · 3 papers
- 2018 Elife
Functional gradients of the cerebellum
Guell X, Schmahmann JD, Gabrieli J, Ghosh SS
- 2018 Otolaryngol Head Neck Surg
Diffusion Tensor Imaging of Central Auditory Pathways in Patients with Sensorineural Hearing Loss: A Systematic Review
Tarabichi O, Kozin ED, Kanumuri VV, Barber S, Ghosh S, Sitek KR, Reinshagen K, Herrmann B, Remenschneider AK, Lee DJ
- 2018 Conference
Distributed Weight Consolidation: A Brain Segmentation Case Study In: NeurIPS - Neural Information Processing Systems 2018
McClure P, Zheng C, Kaczmarzyk J, Rogers-Lee J, Ghosh S, Nielson D, Bandettini P, Pereira F
2017 · 7 papers
- 2017 PLoS Comput Biol
Mindboggling morphometry of human brains
Klein A, Ghosh SS, Bao FS, Giard J, Häme Y, Stavsky E, Lee N, Rossa B, Reuter M, Chaibub Neto E, Keshavan A
- 2017 Gigascience
The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions
O'Connor D, Potler NV, Kovacs M, Xu T, Ai L, Pellman J, Vanderwal T, Parra LC, Cohen S, Ghosh S, Escalera J, Grant-Villegas N, Osman Y, Bui A, Craddock RC, Milham MP
- 2017 J Speech Lang Hear Res
Phonological Working Memory for Words and Nonwords in Cerebral Cortex
Perrachione TK, Ghosh SS, Ostrovskaya I, Gabrieli JDE, Kovelman I
- 2017 Chapter PLoS Comput Biol
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA
- 2017 Neuroimage
Diffeomorphic functional brain surface alignment: Functional demons
Nenning KH, Liu H, Ghosh SS, Sabuncu MR, Schwartz E, Langs G
- 2017 Neuropsychology
Relation of white-matter microstructure to reading ability and disability in beginning readers
Christodoulou JA, Murtagh J, Cyr A, Perrachione TK, Chang P, Halverson K, Hook P, Yendiki A, Ghosh S, Gabrieli JDE
- 2017 F1000Res
A very simple, re-executable neuroimaging publication
Ghosh SS, Poline JB, Keator DB, Halchenko YO, Thomas AG, Kessler DA, Kennedy DN
2016 · 11 papers
- 2016 Proc Natl Acad Sci U S A
Situating the default-mode network along a principal gradient of macroscale cortical organization
Margulies DS, Ghosh SS, Goulas A, Falkiewicz M, Huntenburg JM, Langs G, Bezgin G, Eickhoff SB, Castellanos FX, Petrides M, Jefferies E, Smallwood J
- 2016 Sci Data
The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments
Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA
- 2016 Mol Psychiatry
Brain connectomics predict response to treatment in social anxiety disorder
Whitfield-Gabrieli S, Ghosh SS, Nieto-Castanon A, Saygin Z, Doehrmann O, Chai XJ, Reynolds GO, Hofmann SG, Pollack MH, Gabrieli JD
- 2016 Neuron
Dysfunction of Rapid Neural Adaptation in Dyslexia
Perrachione TK, Del Tufo SN, Winter R, Murtagh J, Cyr A, Chang P, Halverson K, Ghosh SS, Christodoulou JA, Gabrieli JDE
- 2016 Alzheimers Dement
Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease
Allen GI, Amoroso N, Anghel C, Balagurusamy V, Bare CJ, Beaton D, Bellotti R, Bennett DA, Boehme KL, Boutros PC, Caberlotto L, Caloian C, Campbell F, Chaibub Neto E, Chang YC, Chen B, Chen CY, Chien TY, Clark T, Das S, Davatzikos C, Deng J, Dillenberger D, Dobson RJ, Dong Q, Doshi J, Duma D, Errico R, Erus G, Everett E, Fardo DW, Friend SH, Fröhlich H, Gan J, St George-Hyslop P, Ghosh SS, Glaab E, Green RC, Guan Y, Hong MY, Huang C, Hwang J, Ibrahim J, Inglese P, Iyappan A, Jiang Q, Katsumata Y, Kauwe JS, Klein A, Kong D, Krause R, Lalonde E, Lauria M, Lee E, Lin X, Liu Z, Livingstone J, Logsdon BA, Lovestone S, Ma TW, Malhotra A, Mangravite LM, Maxwell TJ, Merrill E, Nagorski J, Namasivayam A, Narayan M, Naz M, Newhouse SJ, Norman TC, Nurtdinov RN, Oyang YJ, Pawitan Y, Peng S, Peters MA, Piccolo SR, Praveen P, Priami C, Sabelnykova VY, Senger P, Shen X, Simmons A, Sotiras A, Stolovitzky G, Tangaro S, Tateo A, Tung YA, Tustison NJ, Varol E, Vradenburg G, Weiner MW, Xiao G, Xie L, Xie Y, Xu J, Yang H, Zhan X, Zhou Y, Zhu F, Zhu H, Zhu S, Alzheimer's Disease Neuroimaging Initiative
- 2016 Neuroimage
NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain
Gorgolewski KJ, Varoquaux G, Rivera G, Schwartz Y, Sochat VV, Ghosh SS, Maumet C, Nichols TE, Poline JB, Yarkoni T, Margulies DS, Poldrack RA
- 2016 Sci Data
Sharing brain mapping statistical results with the neuroimaging data model
Maumet C, Auer T, Bowring A, Chen G, Das S, Flandin G, Ghosh S, Glatard T, Gorgolewski KJ, Helmer KG, Jenkinson M, Keator DB, Nichols BN, Poline JB, Reynolds R, Sochat V, Turner J, Nichols TE
- 2016 Front Hum Neurosci
Decreased Cerebellar-Orbitofrontal Connectivity Correlates with Stuttering Severity: Whole-Brain Functional and Structural Connectivity Associations with Persistent Developmental Stuttering
Sitek KR, Cai S, Beal DS, Perkell JS, Guenther FH, Ghosh SS
- 2016 Conference Gigascience
Brainhack: a collaborative workshop for the open neuroscience community
Cameron Craddock R, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, J Gerber A, S Ghosh S, J Grabowski T, Hill S, Sólon Heinsfeld A, Matthew Hutchison R, Kundu P, R Laird A, Liew SL, J Lurie D, G McLaren D, Meneguzzi F, Mennes M, Mesmoudi S, O'Connor D, H Pasaye E, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, S Saad Z, Shi Y, C Strother S, Toro R, Q Uddin L, D Van Horn J, W Van Meter J, C Welsh R, Xu T
- 2016 Conference Interspeech 2016;
Neurophysiological Vocal Source Modeling for Biomarkers of Disease
Ciccarelli G, Quatieri T, Ghosh S
- 2016 Preprint bioRxiv (Cold Spring Harbor Laboratory)
Linked Data in Neuroscience: Applications, Benefits, and Challenges
B. Nolan Nichols, Satrajit Ghosh, Tibor Auer, Thomas J. Grabowski, Camille Maumet, David B. Keator, Maryann E. Martone, Kilian M. Pohl, Jean‐Baptiste Poline
2015 · 4 papers
- 2015 Front Neuroinform
NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain
Gorgolewski KJ, Varoquaux G, Rivera G, Schwarz Y, Ghosh SS, Maumet C, Sochat VV, Nichols TE, Poldrack RA, Poline JB, Yarkoni T, Margulies DS
- 2015 Neuron
Prediction as a humanitarian and pragmatic contribution from human cognitive neuroscience
Gabrieli JDE, Ghosh SS, Whitfield-Gabrieli S
- 2015 Med Image Comput Comput Assist Interv
Predicting Activation Across Individuals with Resting-State Functional Connectivity Based Multi-Atlas Label Fusion
Langs G, Golland P, Ghosh S
- 2015
Segment-dependent dynamics in predicting Parkinson's disease
James R. Williamson, Thomas F. Quatieri, Brian S. Helfer, Joseph Perricone, Satrajit Ghosh, Gregory Ciccarelli, Daryush D. Mehta
2014 · 4 papers
- 2014 Front Hum Neurosci
Diffusion imaging of cerebral white matter in persons who stutter: evidence for network-level anomalies
Cai S, Tourville JA, Beal DS, Perkell JS, Guenther FH, Ghosh SS
- 2014 PLoS One
Brain bases of reading fluency in typical reading and impaired fluency in dyslexia
Christodoulou JA, Del Tufo SN, Lymberis J, Saxler PK, Ghosh SS, Triantafyllou C, Whitfield-Gabrieli S, Gabrieli JD
- 2014 Conference Brain Lang
Impaired timing adjustments in response to time-varying auditory perturbation during connected speech production in persons who stutter
Cai S, Beal DS, Ghosh SS, Guenther FH, Perkell JS
- 2014 Chapter Neuroimage Clin
Optimizing real time fMRI neurofeedback for therapeutic discovery and development
Stoeckel LE, Garrison KA, Ghosh S, Wighton P, Hanlon CA, Gilman JM, Greer S, Turk-Browne NB, deBettencourt MT, Scheinost D, Craddock C, Thompson T, Calderon V, Bauer CC, George M, Breiter HC, Whitfield-Gabrieli S, Gabrieli JD, LaConte SM, Hirshberg L, Brewer JA, Hampson M, Van Der Kouwe A, Mackey S, Evins AE
2013 · 5 papers
- 2013 JAMA Psychiatry
Predicting treatment response in social anxiety disorder from functional magnetic resonance imaging
Doehrmann O, Ghosh SS, Polli FE, Reynolds GO, Horn F, Keshavan A, Triantafyllou C, Saygin ZM, Whitfield-Gabrieli S, Hofmann SG, Pollack M, Gabrieli JD
- 2013 J Neurophysiol
Roles of default-mode network and supplementary motor area in human vigilance performance: evidence from real-time fMRI
Hinds O, Thompson TW, Ghosh S, Yoo JJ, Whitfield-Gabrieli S, Triantafyllou C, Gabrieli JD
- 2013 Front Neurosci
Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences
Tustison NJ, Johnson HJ, Rohlfing T, Klein A, Ghosh SS, Ibanez L, Avants BB
- 2013 Conference 2013 International Workshop on Pattern Recognition in Neuroimaging (PRNI);
Predicting Treatment Response from Resting State fMRI Data: Comparison of Parcellation Approaches
Ghosh S, Keshavan A, Langs G
- 2013 Front
Optimized design and analysis of sparse-sampling fMRI experiments
Perrachione, T.K., Ghosh, S.S
2012 · 4 papers
- 2012 Front Neuroinform
Data sharing in neuroimaging research
Poline JB, Breeze JL, Ghosh S, Gorgolewski K, Halchenko YO, Hanke M, Haselgrove C, Helmer KG, Keator DB, Marcus DS, Poldrack RA, Schwartz Y, Ashburner J, Kennedy DN
- 2012 PLoS One
Weak responses to auditory feedback perturbation during articulation in persons who stutter: evidence for abnormal auditory-motor transformation
Cai S, Beal DS, Ghosh SS, Tiede MK, Guenther FH, Perkell JS
- 2012 Front Comput Neurosci
Learning from open source software projects to improve scientific review
Ghosh SS, Klein A, Avants B, Millman KJ
- 2012 Preprint arXiv (Cornell University)
Towards structured sharing of raw and derived neuroimaging data across existing resources
David B. Keator, Karl G. Helmer, Steffener, J., Jessica A. Turner, Theo G.M. van Erp, Syam Gadde, Naveen Ashish, Gully Burns, B. Nolan Nichols, Satrajit Ghosh
2011 · 7 papers
- 2011 Front Neuroinform
Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python
Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS
- 2011 Neuroimage
fMRI investigation of unexpected somatosensory feedback perturbation during speech
Golfinopoulos E, Tourville JA, Bohland JW, Ghosh SS, Nieto-Castanon A, Guenther FH
- 2011 J Neurosci
Focal manipulations of formant trajectories reveal a role of auditory feedback in the online control of both within-syllable and between-syllable speech timing
Cai S, Ghosh SS, Guenther FH, Perkell JS
- 2011 Neuroimage
Computing moment-to-moment BOLD activation for real-time neurofeedback
Hinds O, Ghosh S, Thompson TW, Yoo JJ, Whitfield-Gabrieli S, Triantafyllou C, Gabrieli JD
- 2011 Arch Otolaryngol Head Neck Surg
Cine magnetic resonance imaging with simultaneous audio to evaluate pediatric velopharyngeal insufficiency
Silver AL, Nimkin K, Ashland JE, Ghosh SS, van der Kouwe AJ, Brigger MT, Hartnick CJ
- 2011 J Speech Lang Hear Res
The influence of auditory acuity on acoustic variability and the use of motor equivalence during adaptation to a perturbation
Brunner J, Ghosh S, Hoole P, Matthies M, Tiede M, Perkell J
- 2011 Conference
"Phonetic variability in speech perception and the phonological deficit in dyslexia." 17th Meeting of the International Congress of Phonetic Sciences, (Hong Kong, August 2011)
Perrachione, T.K., Del Tufo, S.N., Ghosh, S.S., Gabrieli, J.D.E
2010 · 2 papers
- 2010 Neuroimage
Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11 years of age
Ghosh SS, Kakunoori S, Augustinack J, Nieto-Castanon A, Kovelman I, Gaab N, Christodoulou JA, Triantafyllou C, Gabrieli JD, Fischl B
- 2010 Neuroimage
Evaluation of volume-based and surface-based brain image registration methods
Klein A, Ghosh SS, Avants B, Yeo BT, Fischl B, Ardekani B, Gee JC, Mann JJ, Parsey RV
2008 · 4 papers
- 2008 J Speech Lang Hear Res
A neuroimaging study of premotor lateralization and cerebellar involvement in the production of phonemes and syllables
Ghosh SS, Tourville JA, Guenther FH
- 2008 Conference Proceedings of ISSP 2008 - 8th International Seminar on Speech Production
A system for online dynamic perturbation of formant trajectories and results from perturbations of the mandarin triphthong /iau
Cai, S., Boucek, M., Ghosh, S.S., Guenther, F.H., Perkell, J.S
- 2008 Conference Proceedings of ISSP 2008 - 8th International Seminar on Speech Production
Mechanisms of vowel production: Auditory goals and speaker acuity
Perkell, J.S., Lane, H., Ghosh, S., Matthies, M.L., Tiede, M., Guenther, F., Ménard, L
- 2008 Med Image Comput Comput Assist Interv
Prediction of Successful Memory Encoding from fMRI Data
Balci SK, Sabuncu MR, Yoo J, Ghosh SS, Whitfield-Gabrieli S, Gabrieli JD, Golland P
2007 · 1 paper
- 2007 Conference Proceedings of the XVIth International Congress of Phonetic Sciences
Gestural phasing in /kt/ sequences contrasting within and cross word contexts
Tiede, M., Shattuck-Hufnagel, S., Johnson, B., Ghosh, S., Matthies, M., Zandipour, M., Perkell, J
2006 · 1 paper
- 2006 Brain Lang
Neural modeling and imaging of the cortical interactions underlying syllable production
Guenther FH, Ghosh SS, Tourville JA
2005 · 1 paper
- 2005 BMC Med Imaging
Mindboggle: automated brain labeling with multiple atlases
Klein A, Mensh B, Ghosh S, Tourville J, Hirsch J
2004 · 2 papers
- 2004 J Speech Lang Hear Res
Representation of sound categories in auditory cortical maps
Guenther FH, Nieto-Castanon A, Ghosh SS, Tourville JA
- 2004 Contemporary Issues in Communication Science and Disorders
Unstable or insufficiently activated internal models and feedback-biased motor control as sources of dysfluency: A theoretical model of stuttering
Max, L., Guenther, F.H., Gracco, V.L., Ghosh, S.S., Wallace, M.E
2003 · 3 papers
- 2003 Neuroimage
Region of interest based analysis of functional imaging data
Nieto-Castanon A, Ghosh SS, Tourville JA, Guenther FH
- 2003 Conference Proceedings of the XVth International Congress of Phonetic Sciences (pp
A model of cortical and cerebellar function in speech
Guenther, F.H., Ghosh, S.S
- 2003 Conference Proceedings of the 6th International Seminar on Speech Production
A neural model of speech production
Guenther, F.H., Ghosh, S.S., Nieto-Castanon, A
2001 · 1 paper
- 2001 Conference Proceedings of the Speech Recognition as Pattern Classification (SPRAAC) Workshop, Nijmegen, The Netherlands
The effects of categorization training on auditory perception and cortical representations
Guenther, F.H., Nieto-Castanon, A., Tourville, J.A., Ghosh, S.S