2025 Proc Int World Wide Web Conf
Bridging the Scientific Knowledge Gap and Reproducibility: A Survey of Provenance, Assertion and Evidence Ontologies
Chhetri TR, Halchenko YO, Jarecka D, Trivedi P, Ghosh SS, Ray P, Ng L
BICAN Knowledgebase (BrainKB)
NIMH U24 MH130918 (MPI with Mufti, Hawrylycz, Ng — Allen Institute)
An extensible, open-access Brain Cell Knowledge Base built for the BRAIN Initiative Cell Atlas Network. Ingests and standardizes cell-type information across multimodal, multi-species brain atlases and exposes it via the BrainKB platform, the bkbit toolkit, and LinkML-authored schemas. The lab maintains BrainKB, the StructSense extraction agent, and the schemas / data translators.
- open-data-standards
- ml-nlp-knowledge
- reproducibility-tooling
Resources
Links
People
Contributors
Publications
2 papers associated with this project
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- 2023 PLoS Biol
A guide to the BRAIN Initiative Cell Census Network data ecosystem
Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, Mukamel E, Ng L, Osumi-Sutherland D, Peng H, Ray PL, Sanchez R, Regev A, Ropelewski A, Scheuermann RH, Tan SZK, Thompson CL, Tickle T, Tilgner H, Varghese M, Wester B, White O, Zeng H, Aevermann B, Allemang D, Ament S, Athey TL, Baker C, Baker KS, Baker PM, Bandrowski A, Banerjee S, Bishwakarma P, Carr A, Chen M, Choudhury R, Cool J, Creasy H, D'Orazi F, Degatano K, Dichter B, Ding SL, Dolbeare T, Ecker JR, Fang R, Fillion-Robin JC, Fliss TP, Gee J, Gillespie T, Gouwens N, Zhang GQ, Halchenko YO, Harris NL, Herb BR, Hintiryan H, Hood G, Horvath S, Huo B, Jarecka D, Jiang S, Khajouei F, Kiernan EA, Kir H, Kruse L, Lee C, Lelieveldt B, Li Y, Liu H, Liu L, Markuhar A, Mathews J, Mathews KL, Mezias C, Miller MI, Mollenkopf T, Mufti S, Mungall CJ, Orvis J, Puchades MA, Qu L, Receveur JP, Ren B, Sjoquist N, Staats B, Tward D, van Velthoven CTJ, Wang Q, Xie F, Xu H, Yao Z, Yun Z, Zhang YR, Zheng WJ, Zingg B
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