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2022 journal original-research Elife

The Neurodata Without Borders ecosystem for neurophysiological data science

Rübel O, Tritt A, Ly R, Dichter BK, Ghosh S, Niu L, Baker P, Soltesz I, Ng L, Svoboda K, Frank L, Bouchard KE

Identifiers and access

DOI
10.7554/eLife.78362
PubMed
36193886
PMC
PMC9531949
PDF
Open-access copy →
Cited by
152

Key findings

The Neurodata Without Borders (NWB) ecosystem defines an open, modular data language for neurophysiology across species and modalities, supported by data-management, analysis, visualisation, and archive tooling that together enable FAIR sharing, reproduction, and reuse of diverse neurophysiology data.

Abstract

Source: pubmed

The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB's impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness.

Topics

  • open-data-standards
  • reproducibility-tooling

Lab authors

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