Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Dörig M, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Halchenko YO, Hannan AJ, Heinsfeld AS, Huber L, Hughes ME, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Meier ML, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira MM, Shaw TB, Sowman PF, Spitz G, Stewart AW, Ye X, Zhu JD, Narayanan A, Bollmann S
Identifiers and access
- DOI
- 10.1038/s41592-023-02145-x
- PubMed
- 38191935
- PMC
- PMC11180540
- Open-access copy →
- Cited by
- 59
Key findings
Neurodesk is an open-source platform that bundles a growing suite of containerised neuroimaging tools with a browser-accessible virtual desktop, CLI, and notebook compatibility, enabling portable, reproducible analysis on personal computers, HPC, and the cloud.
Abstract
Source: pubmed
Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.
Topics
- reproducibility-tooling
- neuroimaging-methods
Associated projects
Lab authors
This record was curated from the lab's CV, NCBI MyBibliography, and OpenAlex. See PROJECTS.md for how to add or correct an entry via a pull request.