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2017 journal methods F1000Res

A very simple, re-executable neuroimaging publication

Ghosh SS, Poline JB, Keator DB, Halchenko YO, Thomas AG, Kessler DA, Kennedy DN

Identifiers and access

DOI
10.12688/f1000research.10783.2
PubMed
28781753
PMC
PMC5516225
PDF
Open-access copy →
Cited by
14

Key findings

The paper describes a set of supplementary procedures — defining data, workflow, execution environment, and results — that turn a neuroimaging manuscript into a verifiable, re-executable publication and thereby a starting point for assessing finding generalisability.

Abstract

Source: pubmed

Reproducible research is a key element of the scientific process. Re-executability of neuroimaging workflows that lead to the conclusions arrived at in the literature has not yet been sufficiently addressed and adopted by the neuroimaging community. In this paper, we document a set of procedures, which include supplemental additions to a manuscript, that unambiguously define the data, workflow, execution environment and results of a neuroimaging analysis, in order to generate a verifiable re-executable publication. Re-executability provides a starting point for examination of the generalizability and reproducibility of a given finding.

Topics

  • reproducibility-tooling

Associated projects

Lab authors

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